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1

Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal

Mateo, Juan L., van den Berg, Debbie L.C., Haeussler, Maximilian, Drechsel, Daniela, Gaber, Zachary B., Castro, Diogo S., Robson, Paul, Crawford, Gregory E., Flicek, Paul, Ettwiller, Laurence, Wittbro

Journal:

Genome Research

Year:

2015

Language:

english

File:

PDF, 11.80 MB

english, 2015

2

Cloning and expression of theApa LI,Nsp I,Nsp HI,Sac I,Sca I, andSap I restriction-modification systems inEscherichia coli

S.-y. Xu, J.-p. Xiao, L. Ettwiller, M. Holden, J. Aliotta, C. L. Poh, M. Dalton, D. P. Robinson, T. R. Petronzio, L. Moran, M. Ganatra, J. Ware, B. Slatko, J. Benner

Journal:

Molecular Genetics and Genomics

Year:

1998

Language:

english

File:

PDF, 153 KB

english, 1998

3

Transcriptional disruptions in Down syndrome: a case study in the Ts1Cje mouse cerebellum during post-natal development

M.-C. Potier, I. Rivals, G. Mercier, L. Ettwiller, R. X. Moldrich, J. Laffaire, L. Personnaz, J. Rossier, L. Dauphinot

Journal:

Journal of Neurochemistry

Year:

2006

Language:

english

File:

PDF, 312 KB

english, 2006

4

Large-scale analysis of the regulatory architecture of the mouse genome with a transposon-associated sensor

Ruf, Sandra, Symmons, Orsolya, Uslu, Veli Vural, Dolle, Dirk, Hot, Chloé, Ettwiller, Laurence, Spitz, François

Journal:

Nature Genetics

Year:

2011

Language:

english

File:

PDF, 1.34 MB

english, 2011

5

Trawler: de novo regulatory motif discovery pipeline for chromatin immunoprecipitation

Ettwiller, Laurence, Paten, Benedict, Ramialison, Mirana, Birney, Ewan, Wittbrodt, Joachim

Journal:

Year:

2007

Language:

english

File:

PDF, 285 KB

english, 2007

6

Using Trawler_standalone to discover overrepresented motifs in DNA and RNA sequences derived from various experiments including chromatin immunoprecipitation

Haudry, Yannick, Ramialison, Mirana, Paten, Benedict, Wittbrodt, Joachim, Ettwiller, Laurence

Journal:

Nature Protocols

Year:

2010

Language:

english

File:

PDF, 1.17 MB

english, 2010

7

Comparative genomics: genome-wide analysis in metazoan eukaryotes

Ureta-Vidal, Abel, Ettwiller, Laurence, Birney, Ewan

Journal:

Nature Reviews Genetics

Year:

2003

Language:

english

File:

PDF, 463 KB

english, 2003

8

Functional genomics: Guilt by multiple association

Ettwiller, L, Paten, B

Journal:

Year:

2004

Language:

english

File:

PDF, 56 KB

english, 2004

9

A Role for Brain-Specific Homeobox Factor Bsx in the Control of Hyperphagia and Locomotory Behavior

Maria Sakkou, Petra Wiedmer, Katrin Anlag, Anne Hamm, Eve Seuntjens, Laurence Ettwiller, Matthias H. Tschöp, Mathias Treier

Journal:

Cell Metabolism

Year:

2007

Language:

english

File:

PDF, 2.72 MB

english, 2007

10

Analysis of mammalian gene batteries reveals both stable ancestral cores and highly dynamic regulatory sequences

Laurence Ettwiller, Aidan Budd, François Spitz, Joachim Wittbrodt

Journal:

Year:

2008

Language:

english

File:

PDF, 1.13 MB

english, 2008

11

Rapid identification of PAX2/5/8 direct downstream targets in the otic vesicle by combinatorial use of bioinformatics tools

Mirana Ramialison, Baubak Bajoghli, Narges Aghaallaei, Laurence Ettwiller…

Journal:

Year:

2008

Language:

english

File:

PDF, 861 KB

english, 2008

12

The discovery, positioning and verification of a set of transcription-associated motifs in vertebrates

Laurence Ettwiller, Benedict Paten, Marcel Souren, Felix Loosli…

Journal:

Year:

2005

Language:

english

File:

PDF, 2.45 MB

english, 2005

13

Charting the regulatory landscape of the mouse genomein vivo

Orsolva Symmons, Laurence Ettwiller, Sandra Ruf, Veli Uslu…

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 76 KB

english, 2013

14

Functional and topological characteristics of mammalian regulatory domains

Symmons, O., Uslu, V. V., Tsujimura, T., Ruf, S., Nassari, S., Schwarzer, W., Ettwiller, L., Spitz, F.

Journal:

Genome Research

Year:

2014

Language:

english

File:

PDF, 862 KB

english, 2014

15

Tight clusters of bHLH, Sox and POU transcription factors bind and regulate neural stem cell enhancers to control pluripotency and self-renewal

Martynoga, B., Mateo, J.L., Chu, L.T., Haussler, M., Castro, D.S., Bergmann, C., Robson, P., Ettwiller, L., Guillemot, F.

Journal:

International Journal of Developmental Neuroscience

Year:

2012

Language:

english

File:

PDF, 93 KB

english, 2012

16

A novel function of the proneural factor Ascl1 in progenitor proliferation identified by genome-wide characterization of its targets

Castro, D. S., Martynoga, B., Parras, C., Ramesh, V., Pacary, E., Johnston, C., Drechsel, D., Lebel-Potter, M., Garcia, L. G., Hunt, C., Dolle, D., Bithell, A., Ettwiller, L., Buckley, N., Guillemot,

Journal:

Genes & Development

Year:

2011

Language:

english

File:

PDF, 1.79 MB

english, 2011

17

An orchestrated gene expression component of neuronal programmed cell death revealed by cDNA array analysis

Chiang, L. W., Grenier, J. M., Ettwiller, L., Jenkins, L. P., Ficenec, D., Martin, J., Jin, F., DiStefano, P. S., Wood, A.

Journal:

Proceedings of the National Academy of Sciences

Year:

2001

Language:

english

File:

PDF, 682 KB

english, 2001

18

De Novo Genesis of Enhancers in Vertebrates

Eichenlaub, Michael P., Ettwiller, Laurence, Wray, Gregory A.

Journal:

Year:

2011

Language:

english

File:

PDF, 1.66 MB

english, 2011

19

Discovering Novel cis-Regulatory Motifs Using Functional Networks

Ettwiller, L. M.

Journal:

Genome Research

Year:

2003

Language:

english

File:

PDF, 1013 KB

english, 2003

20

In Vivo Validation of a Computationally Predicted Conserved Ath5 Target Gene Set

Del Bene, Filippo, Ettwiller, Laurence, Skowronska-Krawczyk, Dorota, Baier, Herwig, Matter, Jean-Marc, Birney, Ewan, Wittbrodt, Joachim

Journal:

Year:

2007

Language:

english

File:

PDF, 819 KB

english, 2007

21

Protein Coevolution and Isoexpression in Yeast Macromolecular Complexes

Ettwiller, Laurence, Veitia, Reiner A.

Journal:

Comparative and Functional Genomics

Year:

2007

Language:

english

File:

PDF, 172 KB

english, 2007

22

Epigenomic enhancer annotation reveals a key role for NFIX in neural stem cell quiescence

Martynoga, B., Mateo, J. L., Zhou, B., Andersen, J., Achimastou, A., Urban, N., van den Berg, D., Georgopoulou, D., Hadjur, S., Wittbrodt, J., Ettwiller, L., Piper, M., Gronostajski, R. M., Guillemot,

Journal:

Genes & Development

Year:

2013

Language:

english

File:

PDF, 3.29 MB

english, 2013

23

Ascl1 Coordinately Regulates Gene Expression and the Chromatin Landscape during Neurogenesis

Raposo, Alexandre A.S.F., Vasconcelos, Francisca F., Drechsel, Daniela, Marie, Corentine, Johnston, Caroline, Dolle, Dirk, Bithell, Angela, Gillotin, Sébastien, van den Berg, Debbie L.C., Ettwiller, L

Journal:

Year:

2015

Language:

english

File:

PDF, 3.27 MB

english, 2015

24

A novel enrichment strategy reveals unprecedented number of novel transcription start sites at single base resolution in a model prokaryote and the gut microbiome

Ettwiller, Laurence, Buswell, John, Yigit, Erbay, Schildkraut, Ira

Journal:

Year:

2016

Language:

english

File:

PDF, 3.34 MB

english, 2016

25

Global repositioning of transcription start sites in a plant-fermenting bacterium

Boutard, Magali, Ettwiller, Laurence, Cerisy, Tristan, Alberti, Adriana, Labadie, Karine, Salanoubat, Marcel, Schildkraut, Ira, Tolonen, Andrew C.

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 687 KB

english, 2016

26

DNA damage is a pervasive cause of sequencing errors, directly confounding variant identification

Chen, Lixin, Liu, Pingfang, Evans, Thomas C., Ettwiller, Laurence M.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.63 MB

english, 2017

27

Corrigendum: Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal

Mateo, Juan L., van den Berg, Debbie L.C., Haeussler, Maximilian, Drechsel, Daniela, Gaber, Zachary B., Castro, Diogo S., Robson, Paul, Lu, Q. Richard, Crawford, Gregory E., Flicek, Paul, Ettwiller, L

Journal:

Genome Research

Year:

2016

Language:

english

File:

PDF, 70 KB

english, 2016

28

Corrigendum: Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal

Mateo, Juan L., van den Berg, Debbie L.C., Haeussler, Maximilian, Drechsel, Daniela, Gaber, Zachary B., Castro, Diogo S., Robson, Paul, Lu, Q. Richard, Crawford, Gregory E., Flicek, Paul, Ettwiller, L

Journal:

Genome Research

Year:

2017

Language:

english

File:

PDF, 72 KB

english, 2017

29

The Light Responsive Transcriptome of the Zebrafish: Function and Regulation

Weger, Benjamin D., Sahinbas, Meltem, Otto, Georg W., Mracek, Philipp, Armant, Olivier, Dolle, Dirk, Lahiri, Kajori, Vallone, Daniela, Ettwiller, Laurence, Geisler, Robert, Foulkes, Nicholas S., Dickm

Journal:

Year:

2011

Language:

english

File:

PDF, 2.05 MB

english, 2011

30

Combining Computational Prediction of Cis-Regulatory Elements with a New Enhancer Assay to Efficiently Label Neuronal Structures in the Medaka Fish

Mongin, Emmanuel, Auer, Thomas O., Bourrat, Franck, Gruhl, Franziska, Dewar, Ken, Blanchette, Mathieu, Wittbrodt, Joachim, Ettwiller, Laurence, Winkler, Christoph

Journal:

Year:

2011

Language:

english

File:

PDF, 678 KB

english, 2011

31

Handling Permutation in Sequence Comparison: Genome-Wide Enhancer Prediction in Vertebrates by a Novel Non-Linear Alignment Scoring Principle

Dolle, Dirk, Mateo, Juan L., Eichenlaub, Michael P., Sinn, Rebecca, Reinhardt, Robert, Höckendorf, Burkhard, Inoue, Daigo, Centanin, Lazaro, Ettwiller, Laurence, Wittbrodt, Joachim, Roh, Tae-Young

Journal:

Year:

2015

Language:

english

File:

PDF, 2.44 MB

english, 2015

32

SMRT-Cappable-seq reveals complex operon variants in bacteria

Yan, Bo, Boitano, Matthew, Clark, Tyson A., Ettwiller, Laurence

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 1.32 MB

english, 2018

33

Response to Comment on “DNA damage is a pervasive cause of sequencing errors, directly confounding variant identification”

Chen, Lixin, Liu, Pingfang, Evans, Thomas C., Ettwiller, Laurence M.

Journal:

Year:

2018

Language:

english

File:

PDF, 779 KB

english, 2018

34

Solid-phase enzyme catalysis of DNA end repair and 3′ A-tailing reduces GC-bias in next-generation sequencing of human genomic DNA

Zhang, Aihua, Li, Shaohua, Apone, Lynne, Sun, Xiaoli, Chen, Lixin, Ettwiller, Laurence M., Langhorst, Bradley W., Noren, Christopher J., Xu, Ming-Qun

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 2.73 MB

english, 2018

35

RADAR-seq: A RAre DAmage and Repair sequencing method for detecting DNA damage on a genome-wide scale

Zatopek, Kelly M., Potapov, Vladimir, Maduzia, Lisa L., Alpaslan, Ece, Chen, Lixin, Evans, Thomas C., Ong, Jennifer L., Ettwiller, Laurence M., Gardner, Andrew F.

Journal:

Year:

2019

Language:

english

File:

PDF, 2.09 MB

english, 2019

36

In Silico Identification of Novel Biomarkers and Development of New Rapid Diagnostic Tests for the Filarial Parasites Mansonella perstans and Mansonella ozzardi

Poole, C. B., Sinha, A., Ettwiller, L., Apone, L., McKay, K., Panchapakesa, V., Lima, N. F., Ferreira, M. U., Wanji, S., Carlow, C. K. S.

Journal:

Scientific Reports

Year:

2019

File:

PDF, 1.96 MB

2019